PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067945
Common NameLOC107059486
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 383aa    MW: 43054.3 Da    PI: 6.7111
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067945genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like612.5e-1973121554
               G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                           +Wt +LH +F+eav+qL G+ +  Pk+i elm+v gLt+ ++ SHLQk R
  PGSC0003DMP400067945  73 KWTDNLHVKFMEAVQQL-GEGRCYPKKIFELMQVSGLTRIQIGSHLQKCR 121
                           8****************.9*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.74163125IPR017930Myb domain
SuperFamilySSF466896.81E-1467122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-1872122IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-1873123IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MQRGKAREGS EKNRDQINVD DIGNNDNVGN NVVLNGKHKL RNKRDRKSTK DINEDESQSN  60
AINKVVRRRY PTKWTDNLHV KFMEAVQQLG EGRCYPKKIF ELMQVSGLTR IQIGSHLQKC  120
RRNKWRSPKE QKYVCLPSGQ GSSNDSHEPR SNFPKYGAMP RLQTNVLNPQ CNPNEIQKGP  180
EFSFSTPNTN NSFARGENSI QQQFNFPQLQ VQPHSFNIDN SFNDSFLLAQ NNVGGGLQHE  240
TLFGILGSQE LQGSINGNTN YRPGLTFNSG DHDHAQCAYN LNLNATYGTT YSSSRIVSDT  300
DIENVSINQY NLNLNVSDTY VGNAAINGLG ATNTNVQQYI CEPNISDPGN IIVTLYESDI  360
EGRDPNEKEE CEAYYNNTEY LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13645KHKLRNKRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-73HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161529.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLM1DY300.0M1DY30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000962700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.53e-12ARR-B family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]