PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400067317 | ||||||||
Common Name | LOC107060932 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 231aa MW: 25952.3 Da PI: 8.8463 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 38.5 | 2.8e-12 | 21 | 72 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y eC + as+ +++DGC+ f p g g+++ ++C C CHRn HRr + PGSC0003DMP400067317 21 VVYGECNRCLLASV--NVIDGCQAFAPG-GPVGSIEFFQCQFCHCHRNVHRRLDV 72 79****99999987..89*********8.8889*******************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.9E-11 | 21 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-6 | 21 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 12.868 | 23 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MANMLRANQA ARAIYKPKGL VVYGECNRCL LASVNVIDGC QAFAPGGPVG SIEFFQCQFC 60 HCHRNVHRRL DVNNHQVPPA PTQQQAVTQR DVKTEESSNT KNTNHLSHIT AQIFDSPGVS 120 IALAESIMTR ATQKWVYSNK NDGGNKRKKS WDEYIVEEYE KEKPKILANQ LEWTLNIRSE 180 NGKNKKIKKD EDEKPDGFEM YIKAKGKAIK KLHLAQAEES ISSDNHNCPN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400067317 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-157 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015164998.1 | 1e-174 | PREDICTED: zinc-finger homeodomain protein 7-like | ||||
TrEMBL | M1DWR5 | 1e-173 | M1DWR5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400095642 | 1e-174 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15798 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 7e-11 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400067317 |
Entrez Gene | 107060932 |
Publications ? help Back to Top | |||
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