PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067304
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 271aa    MW: 30685.8 Da    PI: 7.0582
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067304genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.61.9e-132211533128
                   NAM  33 vikevdiykv.ePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykgrapkge 117
                            i+ vd+y   +P++L  ++++++++e++ F++ +kk+ +gk+ nr  +   g Wk    +k+v++ k++++g kkt+ f   ++    
  PGSC0003DMP400067304  22 QIQFVDLYGNnKPSQLFdTTTTTTTTEYHVFTQLKKKKGNGKNFNRgiVGGGGSWKGIDISKPVYDWKKSVIGFKKTFRFE--EN---- 104
                           378899996548****745666677799******************74445899**************************7..22.... PP

                   NAM 118 ktdWvmheyrl 128
                           +  W+m+eyrl
  PGSC0003DMP400067304 105 NHVWIMKEYRL 115
                           458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.9331141IPR003441NAC domain
SuperFamilySSF1019414.32E-1716140IPR003441NAC domain
PfamPF023651.0E-534115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNINDEQLMI SLLKFVNGVS VQIQFVDLYG NNKPSQLFDT TTTTTTTEYH VFTQLKKKKG  60
NGKNFNRGIV GGGGSWKGID ISKPVYDWKK SVIGFKKTFR FEENNHVWIM KEYRLCDKFL  120
NALIKSGRIQ EEFVVCRITR SVNTSSQVLP ISSSQPQQTV KSFVQDLGQI SASNVIPSDQ  180
LNSISNGNIR QVSLVTEESK LPQGSVHQET RPHYDIATYH KQLDAYAVSV LETMVPYIPE  240
PPQEDEVDSI PLFSEDFFIG YTDLWLKSWS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2467430.0AC246743.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-100PREDICTED: uncharacterized protein LOC107057785
TrEMBLM1DWQ60.0M1DWQ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000956290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]