PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067301
Common NameLOC102599856
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 281aa    MW: 29948.4 Da    PI: 10.7832
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067301genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP943.1e-2971144969
                   TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssss 69 
                            ++ Tkv+g +RR+R++a+caar+F+L++eLG+++d++ti+WLl+ a+p+i+ +tgt             +++ 
  PGSC0003DMP400067301  71 ADRPTKVDGGGRRIRIPATCAARVFQLTRELGHKTDGETIQWLLERAEPSIISATGTgvtavsingttkiPTTE 144
                           6999*****************************************************66555554443331111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.16570124IPR017887Transcription factor TCP subgroup
PfamPF036345.0E-2471149IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MESKNIKSFT AAPPSAWRRQ VAPPLISPKQ ESHDMAEKSP APSIIKVTLP TPKPRPSVPP  60
PPQLPPRGND ADRPTKVDGG GRRIRIPATC AARVFQLTRE LGHKTDGETI QWLLERAEPS  120
IISATGTGVT AVSINGTTKI PTTENNDTLT GKRKRCDCGN VKFIDVKQRN NHAIRENEAK  180
LPNNMATILA PVMSIVPPQT IMPVGSMFSV PARINSSMAA PSTVWLIQQT PLIPSTRQSA  240
AQVNCVSVRP AATFLGVPSA SLIPASATNV SSSSYSFGHC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067301
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339498.10.0PREDICTED: transcription factor TCP9
TrEMBLM1DWQ30.0M1DWQ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000956260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.15e-39TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]