PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067113
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 296aa    MW: 33008.4 Da    PI: 8.2242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067113genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.2e-101071481055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r R ++i   fe+Lr  +P++      K +K++i+ekAv+YI +Lq
  PGSC0003DMP400067113 107 RERTKKIGILFETLRASIPNL----PAKADKSTIVEKAVNYILKLQ 148
                           899*****************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.95497147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12100160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-9102149No hitNo description
Gene3DG3DSA:4.10.280.102.0E-11102160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-5105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-7107148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNGGGENNHV FPWETNDVWS YLNLNDNQIG SGVTFEGDKL PDPTRSDTYQ PLTVVNEVIE  60
ASTNVGKKRS PPNRKKNGKR IAELNSGADE TGDRGGLEHE IHIWTARERT KKIGILFETL  120
RASIPNLPAK ADKSTIVEKA VNYILKLQNT FEKLEQEKLE RLQEHSIRLM SSQKFTNAGN  180
SWEKYLGDQG STRNSSAITP TTHGASPLMV NNNIPTGFMT WSSPNVILNV CGEDAHISVC  240
SPKKSGLFTF ICYVLGKHKI EIVCAQVSSD QFRSMFMIQA HVSPFIFFKI ICWSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168363.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLM1DWB00.0M1DWB0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000954380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-31bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]