PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400067023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 150aa MW: 16873.3 Da PI: 9.3573 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1e-13 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g + AeI p + r++lg+f t eeAa+a + a+k ++g PGSC0003DMP400067023 77 RYKGVRKRP-WGTYGAEITNPI----QkVRVWLGTFKTMEEAARAFDTAAKMYYG 126 6********.*******99962....35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.6E-29 | 77 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.969 | 77 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-9 | 77 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-26 | 77 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-19 | 77 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.17E-27 | 77 | 136 | No hit | No description |
PRINTS | PR00367 | 1.4E-9 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MVTIIEGRIA RRDGCMDRYV PHGSQTERQR VVVVEVRLGC KEYPYSIPLA FFSIGKEKND 60 VVTATATTVV VPPNEVRYKG VRKRPWGTYG AEITNPIQKV RVWLGTFKTM EEAARAFDTA 120 AKMYYGPNAK LNFPQTNEDN LENANNLET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 71 | 135 | 8 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400067023 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-71 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015163301.1 | 4e-53 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | M1DW37 | 1e-107 | M1DW37_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400095348 | 1e-107 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17252 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-24 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400067023 |
Publications ? help Back to Top | |||
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