PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400066978 | ||||||||
Common Name | LOC107063136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 35808.3 Da PI: 4.6139 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6.1e-09 | 196 | 241 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+P +++ ae+L+ + +YIk Lq PGSC0003DMP400066978 196 QSIAARQRRKKISDKTQELGKLIPGgH------RMNTAEMLQATFNYIKLLQ 241 67889*******************955......9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.46E-12 | 188 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-11 | 189 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.122 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.01E-10 | 194 | 243 | No hit | No description |
Pfam | PF00010 | 2.9E-6 | 196 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-8 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MASVSYYSTS KLEPNVEEEF NSEEMMTMQH LLFDFNYDVE QSLSDENQDQ DCYFDPDEFI 60 LPVEMNKNSE YSVFEKQQKV FQDNIITHNS CFIPDYSVFE STPKRQKFFQ QDFLPNSTHN 120 SCFMPEYSVF EKQQKVNCQG LFNEGFVPNP PMFEDFASYL LPEIPMPVFS SNNAGVVTKK 180 GGSNNNNNEK KKMSAQSIAA RQRRKKISDK TQELGKLIPG GHRMNTAEML QATFNYIKLL 240 QAQAGLLAFM GSYQESFETS NLQKLVGSSL IQEKLYSSEH CLVPKVFLEA LENNQEFQNS 300 QVLEEIKTLI K* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 205 | KKKMSAQSIAARQRRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400066978 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-121 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170083.1 | 0.0 | PREDICTED: transcription factor bHLH52-like | ||||
TrEMBL | M1DW01 | 0.0 | M1DW01_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400095303 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 2e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400066978 |
Entrez Gene | 107063136 |
Publications ? help Back to Top | |||
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