PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066680
Common NameLOC107060898
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19638.8 Da    PI: 8.4862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066680genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.32.3e-0926491639
                          HHHHHHHHHHHHHHHHT-EEEEEE CS
                SRF-TF 16 RrngilKKAeELSvLCdaevavii 39
                           ++ + KKA+ELS+LCd++v ++ 
  PGSC0003DMP400066680 26 KLASLCKKAYELSILCDVKVGIVS 49
                          578899**************9884 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.218348IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-91686IPR002100Transcription factor, MADS-box
PfamPF003193.8E-72848IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSRKRVCLTT SELDEGVKRK KKLDEKLASL CKKAYELSIL CDVKVGIVSS IPEKTDVFAW  60
PSLPEAQKIV NDHIAFPKHK VTMHNNFLQS IVEKREEEVR KLEETLEKME IENLFNELFK  120
GNKLLNEVNV GETKGLLKLI AVKRVQFEQR KIQVNEVAAN NNVAEENVVG HA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221RKRVCLTTSELDEGVKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066680
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164916.11e-121PREDICTED: MADS-box transcription factor 56-like
TrEMBLM1DVD21e-120M1DVD2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000950051e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-08AGAMOUS-like 96
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]