PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066672
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 159aa    MW: 17855.8 Da    PI: 6.1093
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066672genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.16.2e-20858151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ie+ ++rqvtfskRr  +lKKA+E+ + Cd++v+++ fs+ ++l  ++s
  PGSC0003DMP400066672  8 KKIEDIIKRQVTFSKRRSSLLKKAKEIAISCDVDVLLVAFSPANRLSKFCS 58
                          68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-22159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.315160IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-17222IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-21363IPR002100Transcription factor, MADS-box
PfamPF003194.0E-19956IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-172237IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-173758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGRKIEIKKI EDIIKRQVTF SKRRSSLLKK AKEIAISCDV DVLLVAFSPA NRLSKFCSQN  60
RPVSSPLATT GTHLNNPSES GLEYAHSNSN RNLSNNNNII QQNEHSLFQS DAITPNIHGF  120
NYPREENTMG SNEYFADTTY ENDAWDVFLN EALNGEDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754436e-86HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159174.11e-53PREDICTED: uncharacterized protein LOC102587566
TrEMBLM1DVC51e-114M1DVC5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000949971e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.19e-08AGAMOUS-like 104
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]