PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400066385 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28287.3 Da PI: 9.061 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 27.1 | 9.6e-09 | 140 | 167 | 27 | 54 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYR 54 Pk+ile+m+v+gLt+ +v+S LQ R PGSC0003DMP400066385 140 CLPKEILEIMNVPGLTRMQVASYLQNIR 167 57***********************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 50 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 140 | 167 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MSFNNEEQSN NIHETERKTY NLRSKRCRRG KNVIDKGERQ STAISKTVKP KDCIEWTVDL 60 RAKFKEATQR LGKGLVLELV KLKGFMLKNS WILEVSVSSC LAPLCFLVWL VTTWFNIEIA 120 SRNSAVVTSS WGCTSGALGC LPKEILEIMN VPGLTRMQVA SYLQNIRDSS SIQPNGHGSE 180 YDQVYSADQI CAASGHSAKL VGIVDRVGDP SFSQVYRPFA SSSAFYRSVA LGDRGLPHQF 240 VQQFADFLFL SQF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400066385 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | M1DUQ3 | 0.0 | M1DUQ3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094710 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400066385 |
Publications ? help Back to Top | |||
---|---|---|---|
|