PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400066335 | ||||||||
Common Name | LOC102592204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 166aa MW: 19317.5 Da PI: 9.8138 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42 | 1.2e-13 | 21 | 48 | 13 | 40 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40 + +R + ++KKAeELS+LCd+eva+iif PGSC0003DMP400066335 21 LDRRETSLFKKAEELSILCDVEVAIIIF 48 5567888*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-4 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.708 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-14 | 12 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-12 | 15 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MATKRLRDTR NYSENVRNSI LDRRETSLFK KAEELSILCD VEVAIIIFRL GKIQPITWKS 60 TILAQDVLTR YLSFIEVKRL EKLVTHEDYL QKKVDKKEEQ ISKLEKMNEA KEMEILFNQL 120 VEGKSIDELD AREMKGLLKV FAAKLAKLDE RKKELNQPPN PPSNK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400066335 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344958.1 | 1e-116 | PREDICTED: agamous-like MADS-box protein AGL90 | ||||
TrEMBL | M1DUL3 | 1e-114 | M1DUL3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094660 | 1e-115 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 7e-14 | AGAMOUS-like 96 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400066335 |
Entrez Gene | 102592204 |
Publications ? help Back to Top | |||
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