PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400066245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 41888.2 Da PI: 6.5148 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 42 | 88 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia++m R +kqc++rw+++l PGSC0003DMP400066245 42 KGQWTDEEDRKLLRLVKQFGVRKWAQIAEKME-ARAGKQCRERWHNHL 88 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 94 | 136 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE++llv+ +kqlG++ W+ Ia++++ gRt++ +k++w+ PGSC0003DMP400066245 94 KDTWSEEEELLLVESHKQLGNK-WAEIAKRIP-GRTENAIKNHWN 136 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 5.279 | 1 | 12 | IPR017884 | SANT domain |
PROSITE profile | PS51294 | 27.161 | 37 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.79E-29 | 41 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-15 | 41 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 43 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.70E-15 | 45 | 88 | No hit | No description |
Pfam | PF13921 | 1.1E-19 | 45 | 104 | No hit | No description |
SMART | SM00717 | 2.3E-16 | 93 | 141 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.835 | 93 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-20 | 96 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEGFYMNEIQ ENNGLFDHEK NKVKESGKKV KEGNSSTNYL IKGQWTDEED RKLLRLVKQF 60 GVRKWAQIAE KMEARAGKQC RERWHNHLRP DIKKDTWSEE EELLLVESHK QLGNKWAEIA 120 KRIPGRTENA IKNHWNATKR RQNSRRNKNK KNQQGDDDTQ CERKSSSSRS TVLQDYIISK 180 YFMSDDNSPP TATPFYGGGG GTYSGGGCSW ADVSRPPPPP PATTFTGSTP PYSEDDSPSL 240 MTHQTHDEEM NFMQSLFGHN NNITTIETQV VTQDLLNKSS SGLNSFNENP ITQCNVESYT 300 PQYYPPDLYL SYLLDGSNYQ DCFGCGSMNN TNQGCSTSGG GNIKEVDLME MINSTNSQLS 360 QAGTFNKTFF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-43 | 40 | 142 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-43 | 40 | 142 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400066245 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-177 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010322952.2 | 0.0 | transcription factor MYB119 | ||||
TrEMBL | A0A1U8GYC3 | 1e-163 | A0A1U8GYC3_CAPAN; transcription factor MYB51-like | ||||
STRING | Solyc06g076840.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 3e-55 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400066245 |