PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066105
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 277aa    MW: 30487.7 Da    PI: 8.8127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066105genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.14.9e-136896735
                  GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           +TplWR gp  ++ LCnaCG+++r +g+
  PGSC0003DMP400066105 68 RETPLWRPGPTAKPVLCNACGIRWRTRGT 96
                          58********99999**********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002028.82E-1167112No hitNo description
SMARTSM004011.3E-467111IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-76899No hitNo description
PfamPF003201.1E-106896IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-96896IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGIKINYGLI FRNPASSDIL LSSVGRRSSG WGRWILADRC GSATKKKQRK GERKRAGGFR  60
TWSPVVVRET PLWRPGPTAK PVLCNACGIR WRTRGTLDDY LPKHASNEKQ SHQLPSEMKP  120
HLLARDDQKL EVGEEISGQD GSSACLEEEM IHISSLGSAG SSPDKCMQME ETNDKDPHLN  180
PDSVPRRKIS KLRHSILSPA QIQRTLDNNL QAPGFEIISD GDEPVTLIYA RNKYIPPNEI  240
GLGAMLLVSP TTTIERSTPQ SAMAEDTVSC SMDVSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-148HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769745.11e-117GATA transcription factor 26-like
TrEMBLM1DU470.0M1DU47_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000944300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125821014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.11e-15GATA transcription factor 26
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]