PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400066099 | ||||||||
Common Name | LOC107057950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 246aa MW: 26285.1 Da PI: 10.2744 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 87.7 | 2.7e-27 | 41 | 110 | 4 | 73 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 k+r + hTkv+gR+ RvRls caar+F+L++eLG+++ +t+ W l+ a+pai+++tgt++++ ++ PGSC0003DMP400066099 41 VKKRAKYKHTKVEGRGTRVRLSPICAARIFQLTQELGHKSEAETLKWILEHAEPAIIAATGTGTIPTNAI 110 58999*********************************************************99999665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-21 | 45 | 113 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 18.74 | 45 | 99 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVNVDQNKQK VDDNGTKVLG ADPLLGDSHE SAIAVDLSQV VKKRAKYKHT KVEGRGTRVR 60 LSPICAARIF QLTQELGHKS EAETLKWILE HAEPAIIAAT GTGTIPTNAI QVNGMFKIPA 120 TINDGESFVR KRKRAFNSEF YDVHEKSKFA PVAPIAPKGV VPVWPVGNGY YMPPPVARPH 180 LWASPLINVN AVGAGELKLS SSCVSKSAGN GNKLGDGVSV MAPSSTSTSL LATTTTTRRF 240 SKETL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400066099 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158607.1 | 0.0 | PREDICTED: transcription factor TCP9-like | ||||
Swissprot | O64647 | 4e-39 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | M1DU44 | 0.0 | M1DU44_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094424 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400066099 |
Entrez Gene | 107057950 |
Publications ? help Back to Top | |||
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