PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400066080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 222aa MW: 25235 Da PI: 9.7234 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 21 | 7.6e-07 | 181 | 199 | 4 | 22 |
G2-like 4 lrWtpeLHerFveaveqLG 22 +Wt +LH++F +aveqLG PGSC0003DMP400066080 181 AKWTVDLHSKFTKAVEQLG 199 58****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-5 | 177 | 200 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSMLSKEKKK IDMMIIVVNS SDLHCFELFT PAVTLNIISL VVCDKLNRLL AKSALENGAY 60 FCLENQFNKE IVKYLWQLVL REKIQREKSI NGLEANGRNH MNVDEIYDNN IVRDEQQFGE 120 KNMNVDTEEH NNNIHKAEND GVSTGKYKLK RKRGRKGIKQ INEGESRRGV INKTGTRKNC 180 AKWTVDLHSK FTKAVEQLGQ GMISSKLHPY GTCRMLSGGD S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400066080 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF265664 | 0.0 | AF265664.1 Solanum tuberosum resistance gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168890.1 | 1e-52 | PREDICTED: two-component response regulator ARR1-like | ||||
TrEMBL | M1DU28 | 1e-162 | M1DU28_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094405 | 1e-163 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 7e-06 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400066080 |
Publications ? help Back to Top | |||
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