PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065799
Common NameLOC102588257
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 757aa    MW: 82878.3 Da    PI: 5.504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065799genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.7e-2175131157
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                           r++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  PGSC0003DMP400065799  75 RKRYHRHTQHQIQELEAYFKECPHPDDKQRKELSRELGLEHLQVKFWFQNKRTQMKN 131
                           789999************************************************995 PP
2START177.11e-552804964205
                           HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
                 START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                            +a++e+v++a  +ep+W+ s      ++n+de+ + f+++ +     + +ea r+s +v+m+  +lve+l++++  W+ ++     +a
  PGSC0003DMP400065799 280 MAAMDEFVQMAHMQEPLWFPSIengtFMLNQDEYFRVFPRGIGprpigFVTEATRDSSIVIMNNFNLVEILMNVN-HWSSMFSgivsRA 367
                           689*******************999999************999********************************.************* PP

                           EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                 START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                           + ++vis+g      ga+q++ ae+q  sp vp R+ +f+Ry++   +g+w++vdvS+d+ +  p     vR++++pSg+lie  +ng 
  PGSC0003DMP400065799 368 SSVDVISTGgagnpnGAIQVILAETQIASPQVPtRECYFARYCKLRVDGTWAVVDVSLDQLRAGPA----VRSRKRPSGCLIEAAPNGC 452
                           *****************************************************************5....******************* PP

                           EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                 START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                           skvtwvehv+++++ +h ++++lv+sgla+gak+w+a l+rqc 
  PGSC0003DMP400065799 453 SKVTWVEHVEVDDSAVHTIYKPLVSSGLAFGAKRWLASLDRQCD 496
                           ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-2258130IPR009057Homeodomain-like
SuperFamilySSF466895.43E-2062132IPR009057Homeodomain-like
PROSITE profilePS5007117.84872132IPR001356Homeobox domain
SMARTSM003897.4E-1973136IPR001356Homeobox domain
CDDcd000862.97E-1974132No hitNo description
PfamPF000469.3E-1975130IPR001356Homeobox domain
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PROSITE profilePS5084838.791268500IPR002913START domain
SuperFamilySSF559611.04E-27271499No hitNo description
CDDcd088752.56E-109272495No hitNo description
SMARTSM002347.4E-52277497IPR002913START domain
PfamPF018528.1E-47280496IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-5382493IPR023393START-like domain
SuperFamilySSF559614.09E-23514748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPAIHSRPSS SMPSLVENDE TNTGVPLDQP SNMMDSQPNS MDSGSNTSDT AMAQELGGDD  60
HHDDQEEGVN TTRKRKRYHR HTQHQIQELE AYFKECPHPD DKQRKELSRE LGLEHLQVKF  120
WFQNKRTQMK NQLERHENSH LRVENEKMKS ELLRYKEALG NIGNISCPTC GGHRINIGDL  180
SFDERQLRNE NARLKEEIER ISSMAGRIVG KTVFPNNNNG YNSPNPVDFG VLPAYSTPQS  240
VDGEGYNNGG GGFEDVPILS SMINGPISEI EKPFIIELVM AAMDEFVQMA HMQEPLWFPS  300
IENGTFMLNQ DEYFRVFPRG IGPRPIGFVT EATRDSSIVI MNNFNLVEIL MNVNHWSSMF  360
SGIVSRASSV DVISTGGAGN PNGAIQVILA ETQIASPQVP TRECYFARYC KLRVDGTWAV  420
VDVSLDQLRA GPAVRSRKRP SGCLIEAAPN GCSKVTWVEH VEVDDSAVHT IYKPLVSSGL  480
AFGAKRWLAS LDRQCDRIAS AMVTPIPTND MVLSTQESRK SMMKLAERMV NSFSSGVSAT  540
VGNHWTTLSQ GNGTDENVRV MTRKSVGDPG RPHGVVISAA TSFWLPISPK TVFDYLRDEN  600
TRTEWDILSN GGLLQEVAQI TNGTETGNCV SLLRVNSDNV NHSNMIILQE SSTDPTGSYV  660
IYAPVDISAM NGVLNGGDPD YVALLPSGFA ILPDGPSGGR GAYNHGSGGS LLTVAFQILV  720
DLVPVAKLSL GSVATVNNLI VCTVDRIKAA LLAQPT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065799
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-115HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352040.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM1DTG60.0M1DTG6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000941240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]