PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065533
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 273aa    MW: 30558.3 Da    PI: 9.2278
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065533genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer25.53.2e-08941321958
           ZF-HD_dimer  19 ghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                            ++ D C+ f    +  g++++++C  C CH n HR ++ 
  PGSC0003DMP400065533  94 VNVADSCQAFAHG-SPIGSMESFQCQFCHCHQNVHRSTQR 132
                           4789******998.6669******************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-695130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MFRAAREGDF FRSIVSTAKK AELLVLEEFR EPKKARSSVQ FYGASSRGRG SHRGISFFQC  60
HGPVHASMPI VESGQSTRGL IVYGESNRYV LASVNVADSC QAFAHGSPIG SMESFQCQFC  120
HCHQNVHRST QRDVKTEESS NTKKANHLGR INEQIFDSPG VSIALTESIM ARATQKLVHS  180
NKKNDGNKRK KSWDEHVVEE YEKEQPQILA NQLEWTLNMT SENGKNKKIK KDEDEKLDGF  240
EMSIKTKSKA IKKLHLAQAE ESASSDNHKC PN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065533
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-142HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164998.14e-93PREDICTED: zinc-finger homeodomain protein 7-like
TrEMBLM1DSV40.0M1DSV4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000938580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1579845
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]