PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400065338 | ||||||||
Common Name | LOC107063494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 247aa MW: 28707.9 Da PI: 9.7721 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109 | 3.5e-34 | 31 | 122 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 F++k+y+++ed++ +++i ws++g+sfv++d+++f+ +vLpkyFkh+n++SFv QLn YgFkk+ ++ we+ h +F++gk PGSC0003DMP400065338 31 FVTKTYDMVEDPNSNSIICWSSSGTSFVIWDHNRFSFEVLPKYFKHTNMSSFVYQLNNYGFKKIGLQK---------WEYGHYWFQAGK 110 9***************************************************************9998.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++ikr+ + PGSC0003DMP400065338 111 KHLLCNIKRRMK 122 *********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.5E-35 | 27 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.4E-48 | 27 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.54E-32 | 28 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.2E-17 | 31 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.8E-30 | 31 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-17 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-17 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAMNNMNQFS SGEIGHGIGD GAKREPGIAP FVTKTYDMVE DPNSNSIICW SSSGTSFVIW 60 DHNRFSFEVL PKYFKHTNMS SFVYQLNNYG FKKIGLQKWE YGHYWFQAGK KHLLCNIKRR 120 MKNLNAHRDF NQETYFYGVE EEMRSQRDLN ITLKSEFEKL KERQDDMVKG IASLKEYLEK 180 SEAESRKFLC FLAKAVKQVV ATKRDVEVRD VIMSKRRAED VMGSSKSSEK KKMIDFSAIK 240 RVHDIM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-28 | 18 | 121 | 16 | 130 | Heat shock factor protein 1 |
5d5v_B | 4e-28 | 18 | 121 | 16 | 130 | Heat shock factor protein 1 |
5d5v_D | 4e-28 | 18 | 121 | 16 | 130 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400065338 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212434 | 1e-157 | AC212434.2 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence. | |||
GenBank | HG975523 | 1e-157 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170900.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
TrEMBL | M1DSF9 | 0.0 | M1DSF9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400093663 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13740 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-43 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400065338 |
Entrez Gene | 107063494 |
Publications ? help Back to Top | |||
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