PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400065030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27970 Da PI: 8.5809 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+ ++ ++G +W+ ++ g+ Rt+k+c++rw +yl PGSC0003DMP400065030 16 KGAWSPDEDQKLKSYIMKFGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 63 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 6e-14 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE e+ ++ ++lG++ W++Ia +++ gRt++++k++++++l PGSC0003DMP400065030 69 RGPFTMEEVEIVIKTYQELGNR-WSAIAGRLP-GRTDNEIKNFFHTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.082 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.79E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.80E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 22.548 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-12 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.78E-8 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MPRVQLQQQQ STNMKKGAWS PDEDQKLKSY IMKFGIWNWS HMPKFAGLSR TGKSCRLRWM 60 NYLRPDIKRG PFTMEEVEIV IKTYQELGNR WSAIAGRLPG RTDNEIKNFF HTHLKKQLGV 120 KNVASMKRTK RILVKKDKDQ NEMTNICADK SSPNVCNYSL EKSNTTIITW EENEMTDIVS 180 SSNTVVDDME IRQPVILGSN PEIEKISTNN VDCHLCQFEY PHPCTLSGLD FFLQFDVLWD 240 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-24 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400065030 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-170 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068505.1 | 1e-159 | transcription factor WER-like | ||||
Swissprot | Q9SJX8 | 5e-46 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | M1DRS7 | 0.0 | M1DRS7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400093355 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-48 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400065030 |
Publications ? help Back to Top | |||
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