PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400064674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 162aa MW: 17220.2 Da PI: 6.8997 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.8e-09 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 ++tG+Ck+G +CkF+H+ PGSC0003DMP400064674 1 MKTGQCKFGITCKFHHP 17 89**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00642 | 2.1E-6 | 1 | 17 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.131 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKTGQCKFGI TCKFHHPLPA GVQVPASAAG LFPLPAALPP PATYPVLQSL SVDSAEQYGM 60 VTGNLPVIRP SLLPVSYIPD TYGPMLFPPG MVPVLDWTPY LVFILVQLVQ CHPKLLSMQL 120 EQVQFYGHTQ LSASAPAYAG PYVSLTASLA ASSSIQNEFC C* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400064674 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 5e-99 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267357.1 | 8e-56 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
TrEMBL | M1DR17 | 1e-111 | M1DR17_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400092999 | 1e-112 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15985 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 2e-23 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400064674 |
Publications ? help Back to Top | |||
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