PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400064360
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 324aa    MW: 35612.6 Da    PI: 9.5264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400064360genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.31.9e-081459251
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51
                          +y+GV+ ++   r+   I +p     + ++++l +fgt+e+Aa  +++a +
  PGSC0003DMP400064360 14 RYRGVSKRP-LMRYSTKITEPI----QqTHIWLRTFGTPEQAAVTYDKAVR 59
                          69*******.8******99972....36*******************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-131461IPR001471AP2/ERF domain
SMARTSM003801.5E-41469IPR001471AP2/ERF domain
PROSITE profilePS5103211.9431458IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-81462IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVMQWWSIPV YEVRYRGVSK RPLMRYSTKI TEPIQQTHIW LRTFGTPEQA AVTYDKAVRM  60
IFPPGRGRCS QVRTAVAGQA RLKPRTNGKN PKREESYFLG DSSFVRGVTF RHTNLDQVPY  120
SGAYMGSGVT FGTLTWIGLN DVRPVAPVNE PTEESATRGR SQGRSRGRAM GRGRGRVAPN  180
KDGALVNNAP RNEAPPVHHE EVEENVEVEN EENVGQEEEV QTGTTCIPPL DPLLAKDIMS  240
FLKGLVGPGV LPSIQATQAP ANPPIAITFP KVGGTVGTDA FFRPLLGLVM TGNEHAMLTK  300
CLKLKPPVFH GFESVDAYQF ILD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400064360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159972.12e-36PREDICTED: cinnamate beta-D-glucosyltransferase-like
TrEMBLM1DQB60.0M1DQB6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000926850.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-13ERF domain protein 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]