PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063465
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 412aa    MW: 46954.4 Da    PI: 4.6444
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063465genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind989.1e-31901822103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F+ k+ye+l d ++k+lisws+ng+sf+++d+++fa +vLp++F+h+n++SFv QLn YgFkkv+ ++          eF+h+ F++gk
  PGSC0003DMP400063465  90 FVLKIYEMLADIQFKSLISWSNNGTSFIIHDNHKFAVEVLPRFFRHNNISSFVCQLNSYGFKKVSWDK---------FEFRHDCFQRGK 169
                           9*****************************************************************99.........67********** PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                            + l++ikrk s+
  PGSC0003DMP400063465 170 GQWLRNIKRKISK 182
                           *********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.7E-3886179IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.9E-3187179IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.98E-2988179IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-1390113IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-2790179IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-13128140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-13141153IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
METEGGKGKG KMTEIDDIVE ALGESYEGLE DVHIDISMLE DDNDDDDNQC DNRSNEVIHG  60
NAATATPTTP RELFSSSSNR RNFQRRASPF VLKIYEMLAD IQFKSLISWS NNGTSFIIHD  120
NHKFAVEVLP RFFRHNNISS FVCQLNSYGF KKVSWDKFEF RHDCFQRGKG QWLRNIKRKI  180
SKSQMNEQST ERQAIDETVA FTMEKEIEEI RVEQVTMREE IMMLQRQLDV LEKEMEDINQ  240
AGNNMSSKKA KICMILFNSL FACTRGLDST EVAEEQGGEV EDGVENSGKG NRGKKRKMQV  300
VEELEGDNEG RKKGNPSKKR KMQVVEELEG DNEGRKKIAD AADFKTDSYL GRMLMDEMNL  360
NNLAQEQPDN FLESEELAGS STFWTDYVEK MDHKAISGVD PALSQSQEIP L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-249018129131Heat shock factor protein 1
5d5v_B6e-249018129131Heat shock factor protein 1
5d5v_D6e-249018129131Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063465
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065476.10.0heat stress transcription factor B-3-like
TrEMBLM1DNE40.0M1DNE4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000917900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140991213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-29heat shock transcription factor A2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]