PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062654
Common NameLOC102585917
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 273aa    MW: 32088.2 Da    PI: 4.9613
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062654genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.44.8e-2241292128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           p+G+rFhPtd el+ +yLk+  +g+ +  ee+ i+ +diy    Pw++   ++ eek  yf ++ +k++++ kr +r+ ++g+W+ +  
  PGSC0003DMP400062654   4 PMGIRFHPTDTELI-NYLKRFFKGELCLNEECpIQFADIYGDqPPWEIF-GANFEEKFRYFITPLKKQKTEYKRFSRICAKGTWQGQTG 90 
                           89************.9*********96666777*******87368***6.556677888**************************7766 PP

                   NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++ + ++ +  +vg k+ L f   +++ g++ +W+m ey++
  PGSC0003DMP400062654  91 EHLIRRNrTAPVVGFKRNLKFK--TSECGQNNTWLMVEYHV 129
                           677776535667*********8..789999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-232153IPR003441NAC domain
PROSITE profilePS5100526.8883153IPR003441NAC domain
PfamPF023656.2E-164129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSKPMGIRFH PTDTELINYL KRFFKGELCL NEECPIQFAD IYGDQPPWEI FGANFEEKFR  60
YFITPLKKQK TEYKRFSRIC AKGTWQGQTG EHLIRRNRTA PVVGFKRNLK FKTSECGQNN  120
TWLMVEYHVM DSFFKENNHI PKEDFVVCRI KKKKGKEKNV DHVMEAQDGD IAGIIDPMLF  180
EPNHNNDYST REDQVRVCDE VEATTTEFDV QNSTYEATTM EKRETMLEVQ EGHGIDDIRS  240
DEFKEEMYRA FEDIPVDIPD DWLQNSHVLQ DI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062654
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345197.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLM1DLM50.0M1DLM5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000909790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-15NAC family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]