PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400062358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 15943.5 Da PI: 9.1431 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.7 | 6.9e-09 | 61 | 105 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 y+GVr + +g++ A I + ++lg+f+ +eeAa +++a + + PGSC0003DMP400062358 61 YSGVRKMP-WGKYKADITNQ-----KVCVWLGTFDRKEEAATTYVKATRMY 105 9*******.*******9882.....5****************999986655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-17 | 60 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.46E-14 | 60 | 115 | No hit | No description |
PROSITE profile | PS51032 | 15.132 | 60 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-11 | 60 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-14 | 61 | 117 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-6 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MYVSGLGTLI HKKKPQGFMI RLRECITVLK PNLIFRCQED NLENGIVAIV TIVVTSTEIQ 60 YSGVRKMPWG KYKADITNQK VCVWLGTFDR KEEAATTYVK ATRMYRDLKA KINFPESNED 120 NLENEELNLE LTLALSGRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400062358 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015163300.1 | 6e-52 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
TrEMBL | M1DKY4 | 6e-99 | M1DKY4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400090683 | 1e-100 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-16 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400062358 |
Publications ? help Back to Top | |||
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