PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400062336

Common Name

LOC102584493

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 280aa MW: 30001.5 Da PI: 9.1639

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400062336	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121	1.4e-37	37	128	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 + +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tgt++++as+ a++s+s+++ s s+ PGSC0003DMP400062336 37 APKRKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIFAATGTGTIPASALAAAASVSQQGISVSAglmie 125 5678**************************************************************88866666666552222245544 PP TCP 89 ..k 89 + PGSC0003DMP400062336 126 sgA 128 431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-30	39	231	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	40	94	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDPKQPNNKN IKPTPDQIKD LQILKNDETK KQQQVAAPKR KDRHTKVEGR GRRIRMPALC 60 AARIFQLTRE LGHKSDGETI QWLLQQAEPS IFAATGTGTI PASALAAAAS VSQQGISVSA 120 GLMIESGANI AGSGSSRSSN SRTNWPMICG DFGRPHLATV GIWPAPAPVI TSFGFQSSSA 180 PSSASLGSES SNYYLQKIGF PGFDLPAATN MNPMSFTSIL GGSNQQLPGL ELGLSQEGHL 240 GVLNQIYQQA RMQHPQQQQQ DQHQHQQQSP EDDSQGSGH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400062336

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ896308	0.0	HQ896308.1 Solanum tuberosum clone RH066A20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006365022.1	0.0	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	3e-68	TCP20_ARATH; Transcription factor TCP20
TrEMBL	M1DKW5	0.0	M1DKW5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400090661	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-60	TCP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400062336
Entrez Gene	102584493

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]