PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062326
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 330aa    MW: 36720.3 Da    PI: 4.7222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062326genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.8e-152474155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          + y+GVrw+    +Wv+e+r+p   gk+ r++lg+f  ae+Aa+a++ a  +l+g
  PGSC0003DMP400062326 24 PVYRGVRWKN-FEKWVSEVRVP---GKKSRIWLGTFPNAEMAARAHDVAVMALKG 74
                          68******88.9*********8...557*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-82474IPR001471AP2/ERF domain
PROSITE profilePS5103219.6252582IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-182584IPR016177DNA-binding domain
SMARTSM003801.1E-222588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-272584IPR001471AP2/ERF domain
CDDcd000181.15E-232684No hitNo description
PRINTSPR003672.5E-62637IPR001471AP2/ERF domain
PRINTSPR003672.5E-64864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLLLASKIPK KRGGRKKFRE TRHPVYRGVR WKNFEKWVSE VRVPGKKSRI WLGTFPNAEM  60
AARAHDVAVM ALKGRSACLN FADSAWRLPV PASATAKDIQ KAAAEATETF RASESLEREN  120
SEEVVVNNDD HYVVDSGWRL AIPASAAARD IQKATAEAAE AFRPSESSKG EYFEEVDSTW  180
RLSISASAAA KHIQKAAAEA FCHSESSEGE NYSEEVIIND DQLITQYLID STWRLPIPAS  240
VAAKAATEAF CPSKSSEGEN SEEVTIDEQV IQDIVVPKFT EYNELFMDEE AIFYMPELLV  300
NMAEGLMLPP PQCTYGMEPH DIDMSLWSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062326
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492890.0AC149289.1 Solanum demissum chromosome 11 clone PGEC417F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158984.18e-79PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLM1DKV50.0M1DKV5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000906510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-51C-repeat-binding factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]