PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400061582 | ||||||||
Common Name | LOC102595870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 30811.9 Da PI: 5.157 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.9 | 1.4e-21 | 5 | 129 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgk 88 +G+rFhPtd el+ +yLk+ +g+ +++ i+ +diy Pw++ +++eek yf ++ +k++ ++kr r+ ++g+Wk +tg+ PGSC0003DMP400061582 5 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANSEEKFRYFITPLKKRKIKDKRFCRTCAKGTWKgQTGE 91 7************.9*******9985444556*******87368***5.666777788**************************66666 PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d ++ g +vg k+ + f +++ g++ +W+m eyr+ PGSC0003DMP400061582 92 DLIRRNRMGLVVGFKRNFKFE--TSECGQNKTWLMIEYRV 129 65555558889*********8..788999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.032 | 3 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-15 | 5 | 129 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.14E-22 | 5 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSKQMGIRFH PTDTELINYL KRFFKGELSL NQQCPIQFAD IYGDQPPWEI FGANSEEKFR 60 YFITPLKKRK IKDKRFCRTC AKGTWKGQTG EDLIRRNRMG LVVGFKRNFK FETSECGQNK 120 TWLMIEYRVA DSFFKENNHI VKEDFVVCRI KKKLSMDKEK NVDHVMDAED GDVAEVIDPM 180 LLLEPNDNND YSTTEDQVRV CEATTSEYDV QNSSTMEKRR TTLEVQEGHR VDDIRSEEDM 240 YRTFEDILVD IPDDWLQHSL I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400061582 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366896.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
TrEMBL | M1DJ65 | 0.0 | M1DJ65_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089907 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 5e-17 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400061582 |
Entrez Gene | 102595870 |
Publications ? help Back to Top | |||
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