PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400060834 | ||||||||
Common Name | LOC107058123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18847.6 Da PI: 6.6864 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.9 | 3.9e-11 | 2 | 46 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+++ r+v+fskR+++++ A+ + ++a+v v++fs+ gk PGSC0003DMP400060834 2 KIIESERARTVSFSKRKKTLFEDAKKFATQTGADVGVMLFSPGGK 46 579***************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.708 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-16 | 1 | 79 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-7 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-15 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKIIESERAR TVSFSKRKKT LFEDAKKFAT QTGADVGVML FSPGGKPCSY GSTSIEEIIE 60 NFLKVKLEDR QRDYVEGQSN GFEALEDLHK ELQTCNEKEK KRVLMHKILH PGSEIPRDKH 120 MEDQKLAMKL RVEKIKKETQ NSILVEHLKF DLNVAPEPEG EEES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400060834 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HQ896310 | 0.0 | HQ896310.1 Solanum tuberosum clone RH201H22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158947.1 | 1e-117 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1DHK1 | 1e-116 | M1DHK1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089159 | 1e-117 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-15 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400060834 |
Entrez Gene | 107058123 |
Publications ? help Back to Top | |||
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