PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060683
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 584aa    MW: 65703.4 Da    PI: 5.1559
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060683genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.61.9e-25196249155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k r++Wtp++H++F++a++ L G ekA+Pk+i+e+m+ +gLt+ehv+SHLQkYR+
  PGSC0003DMP400060683 196 KRRVVWTPKMHQSFLQAIQYL-GYEKAVPKKIVEIMNEPGLTREHVASHLQKYRM 249
                           689******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-1114155No hitNo description
SuperFamilySSF521721.17E-81498IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.601.5E-25194253IPR009057Homeodomain-like
SuperFamilySSF466896.81E-18195253IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24196249IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDIPANSSVM GTKNICILLV LDDFTCHNIV SDMLHNQTYQ VLHVGKTMDT LNAVWERKSI  60
FNLVLTNIHR LNTNGVDILQ IIKNKLNLPT IFMSPDDTRC ENQVQDCSVG AYVVSFSDTN  120
EMNKFWQMVL EKEKGRKAAV NQEENDSRLP QNVTAEISRE NTTSADTDVA IKAHDLKGKR  180
KANSDRSEEN RDIEKKRRVV WTPKMHQSFL QAIQYLGYEK AVPKKIVEIM NEPGLTREHV  240
ASHLQKYRMC IKRAQESSAA SIYDQILTND ANAKCFQVQP YLSPLNFSGT RGYSHSIQQP  300
FQTHFQQGTG GMNCPTSGQM GSFQQQNSLL DFANLQQADH NGLIGQHSTY MPRVAHSSNF  360
RVYGDKRKNM LFSIQSGNEN QPTNSSNSGL EFLGFRLSTD GKSVNFGHKS SSCTVIPNNA  420
YSGLCSSISE DYIHKQQSSP QFLETPTENT LIQSSSVQPE NLTFNHPSNS ISQQNLLLFD  480
NAVNIISCEI PEMPDSFIPQ EQLAAQPSSK DLEDYSAILF SDDEVYVPSL ENYDSIQQQY  540
SAPEFPQVTL EVNSLGTEID IKSLLETTED RSTQLFWEEN ELL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17194253362ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178197KRKANSDRSEENRDIEKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060683
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168044.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLM1DH860.0M1DH86_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000890080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36591620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-34response regulator 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]