PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400060470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23843.9 Da PI: 5.8117 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 8.9e-17 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +Wv+eIr+p +k++r++lg+f t+e Aa+a++ a+++l+g PGSC0003DMP400060470 54 LYRGVRRRN-GEKWVCEIREP---NKKTRIWLGTFSTPEIAARAHDVAALALRG 103 69****877.9*********9...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 53 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.93E-30 | 53 | 111 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-20 | 54 | 112 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.076 | 54 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-30 | 54 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-30 | 54 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDFEDALTSS SSSSSDHDNK EKNIDLSSCS TNNNNVQFKR RAGRKKFKET RHPLYRGVRR 60 RNGEKWVCEI REPNKKTRIW LGTFSTPEIA ARAHDVAALA LRGSNALLNF PGSAWSLPKA 120 KSSSPQDIQI AVLQVNKELV VSSSPLEEPS CKPKDDEVNS LMEFMDEEAM FNMPIFIDSM 180 AEGMLLTPPA MKRGFNWGDV EEDVEFTLWK D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 52 | 111 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400060470 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088018.2 | 1e-134 | dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | M1DGQ8 | 1e-155 | M1DGQ8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400088795 | 1e-156 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 7e-45 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400060470 |
Publications ? help Back to Top | |||
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