PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060123
Common NameLOC102595824
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 319aa    MW: 34977 Da    PI: 4.8224
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060123genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.2e-1395139347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+  +++++  +G+g+Wk+I+r   k+Rt+ q+  + qky
  PGSC0003DMP400060123  95 PWTEEEHRSFLQGIDIYGKGDWKSISRNCVKTRTPMQVATHAQKY 139
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.068859IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-71061IPR009057Homeodomain-like
CDDcd001677.85E-41257No hitNo description
PROSITE profilePS500904.7281257IPR017877Myb-like domain
PROSITE profilePS5129416.13788144IPR017930Myb domain
SuperFamilySSF466892.14E-1691144IPR009057Homeodomain-like
SMARTSM007171.6E-1092142IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.9E-1493142IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.6E-1194141IPR009057Homeodomain-like
PfamPF002496.4E-1095139IPR001005SANT/Myb domain
CDDcd001671.61E-1095140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTTDRTCKSS FWTREEDKIF ENILAIYFDD NNLFMKMEEA LPGKLVDQIK DHYNILLEDI  60
DAIDSGRAPL PNYPELQSNA NQNKKADVKW RRGTPWTEEE HRSFLQGIDI YGKGDWKSIS  120
RNCVKTRTPM QVATHAQKYF KRVEANKKGK RRARAKPSVL DITGVDAEFG GNSQVPFAVD  180
MIGPACEGSQ AVPDTSTESM CHRESTNAEQ MTAVVGGELS GENAFVNVDA SSGTSGHSIP  240
RIGSELEALL SHPMDEDNDF NLIFDVGMAP TSDAGIAPTA QIGMSGYAAA GEAPAQLPPF  300
SPSSYFGDGV WRSLDTRR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060123
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361820.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN69e-42SRM1_ARATH; Transcription factor SRM1
TrEMBLM1DFZ90.0M1DFZ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000884480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-41MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]