PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060071
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 268aa    MW: 30259.4 Da    PI: 5.1795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060071genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.57.3e-12711611128
                   NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknr..atksgyWkatgkdkevlsk 95 
                           de+l++  L + v+g+++++    + vd+y   +P+++   ++++++e++ F++ +kk++ +gk+ nr  +   g Wk    +k+v++ 
  PGSC0003DMP400060071   7 DEQLMTS-LLQFVSGSSVQF----QLVDLYGNnKPSQIF-DTTTTSTEYHVFTQLKKKKTgNGKNFNRgiVGGGGSWKGIDISKPVYDW 89 
                           5555533.445566666554....678888653899996.555667899999887666654899****74445899************* PP

                   NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++++g kkt+ f   ++    +  W+m+eyrl
  PGSC0003DMP400060071  90 KKSVIGFKKTFRFE--EN----NHVWIMKEYRL 116
                           *************7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.3671144IPR003441NAC domain
PfamPF023654.6E-67116IPR003441NAC domain
SuperFamilySSF1019418.24E-1528143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEMNFDDEQL MTSLLQFVSG SSVQFQLVDL YGNNKPSQIF DTTTTSTEYH VFTQLKKKKT  60
GNGKNFNRGI VGGGGSWKGI DISKPVYDWK KSVIGFKKTF RFEENNHVWI MKEYRLCDKL  120
LNSLIQLGRI QHEEEFVVCR ITRSVNSSSQ FIIPKVENFL PTVKSLVQDL GQTSAANVIP  180
SVQLNGILNG NISLLTKESK LPAAKEEGSV YDIATYHKEL DAYAASILET MVPYIPEPPQ  240
EDEVDSVPLF CEDFLIGYTD LWFKSWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-143HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-100PREDICTED: uncharacterized protein LOC107057785
TrEMBLM1DFW00.0M1DFW0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000883960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]