PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059724
Common NameLOC102590965
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 271aa    MW: 28825.8 Da    PI: 9.619
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059724genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP869.1e-27511565114
                   TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                           k++ +  hT v+g + RvRls  caar+F+L++eLG+++ ++ti W l+ a+pai+++tgt++ +a ++  +++ ++ a       ++ 
  PGSC0003DMP400059724  51 KKSAKYKHTTVEGHGTRVRLSPICAARIFQLTRELGHKSEGETIKWILERAEPAIIAATGTGTVPAIAVqVNGTLKVPAT-----INEG 134
                           7888999******************************************************9999955521111111111.....2222 PP

                   TCP  93 saakskksqksaasalnlakes 114
                           ++  +k++++s++++ +++kes
  PGSC0003DMP400059724 135 ESLMRKRKRASNSEFYDMHKES 156
                           2334444444444445555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-2053130IPR005333Transcription factor, TCP
PROSITE profilePS5136917.6454108IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVNVENKQNI EQEHDDVNQT KVLGVDPLLS DSHESAIAAD SSQEAEKQVV KKSAKYKHTT  60
VEGHGTRVRL SPICAARIFQ LTRELGHKSE GETIKWILER AEPAIIAATG TGTVPAIAVQ  120
VNGTLKVPAT INEGESLMRK RKRASNSEFY DMHKESKFAP VAPITPKGVV PVWPVGNGYY  180
MLPPVAGLHL RASPLINVNA VGASEVKLSS SCVSKCAGNG NKLGDGISVM APSSTSTSPG  240
ATTTTTRGFP LEIFNKKVHQ LMNGFGSTKS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362708.10.0PREDICTED: transcription factor TCP9-like
SwissprotO646472e-47TCP9_ARATH; Transcription factor TCP9
TrEMBLM1DF450.0M1DF45_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000880490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-48TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]