PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400059577 | ||||||||
Common Name | LOC107061828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Trihelix | ||||||||
Protein Properties | Length: 254aa MW: 28928.5 Da PI: 9.1604 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69 | 9e-22 | 40 | 132 | 1 | 84 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rWtk+e+l+Li++++ +++r+ r++ + +++W+ vs++++++ ++r+p+qC+++w+nl++++kkike+e++ ++e++s + PGSC0003DMP400059577 40 RWTKHEILVLIQGKKLVQDRIHRARtggmelgstQVEAKWDFVSSYCKRQVVNRGPIQCQKRWSNLAGDFKKIKEWESQIKEEKESFWI 128 8**************99999998755566666669*********************************************999998887 PP trihelix 81 yfdq 84 + ++ PGSC0003DMP400059577 129 MRND 132 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.7E-10 | 40 | 127 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MASKSNNLKQ LILIPSTDSD DRQQSINGVN DANKVLRLPR WTKHEILVLI QGKKLVQDRI 60 HRARTGGMEL GSTQVEAKWD FVSSYCKRQV VNRGPIQCQK RWSNLAGDFK KIKEWESQIK 120 EEKESFWIMR NDFKREEKLP GFFDRQVFDI LDHGNGNEEG LDLASEREVL FDSGRSVVVG 180 DDGLFSNVPQ MNEDAIRMLT SEEQHQPLSQ VSPTEAGVRQ TTTRGADKGR GQEGRKRKRN 240 DSNDEKKGMS NII* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400059577 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246636 | 0.0 | AC246636.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015167211.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3-like | ||||
Swissprot | Q8VZ20 | 1e-62 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | M1DET4 | 0.0 | M1DET4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400087902 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-65 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400059577 |
Entrez Gene | 107061828 |
Publications ? help Back to Top | |||
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