PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059468
Common NameLOC107061835
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 309aa    MW: 34721.4 Da    PI: 10.1312
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059468genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.35e-2440132184
              trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                           rWtkqe+l+Li++++ +e+r+ +++         + +++W++vs++++++g++r+p+qC+++w+nl++ +kkike+e++ ++e++s + 
  PGSC0003DMP400059468  40 RWTKQEILVLIQGKKVVEDRIHQARtggmelgsiQVEAKWDSVSSYCKRQGVNRGPIQCQKRWSNLAGGFKKIKEWESQIKEEKKSFWM 128
                           8*********************987778889989**********************************************999998888 PP

              trihelix  81 yfdq 84 
                           + ++
  PGSC0003DMP400059468 129 MRND 132
                           7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.1E-1140129No hitNo description
PROSITE profilePS500906.3340106IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MASKSNNLKQ LILIPSTDSD GHQQSINGVN DANKVSRLPR WTKQEILVLI QGKKVVEDRI  60
HQARTGGMEL GSIQVEAKWD SVSSYCKRQG VNRGPIQCQK RWSNLAGGFK KIKEWESQIK  120
EEKKSFWMMR NDFKREKKLP GFFDRQVFDI LDHGNGNVEG LDLASVSEVL FDSGRSVVVG  180
DDGLFSDVPQ MNEDAIPMLT LKEPHQPHSE VSPTQAGVRK TTTPGADKGR GQEGRKKKRN  240
DSNDEKTRNV QHHLVKVLER NGKMVSSQLE AQNMHSEKDR EQRKDHVDNL VVVLNKLVGA  300
LGRIADKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2466360.0AC246636.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167219.10.0PREDICTED: trihelix transcription factor ASR3-like
SwissprotQ8VZ202e-87ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLM1DEK30.0M1DEK3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000877930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-76Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]