PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059136
Common NameLOC107061830
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 309aa    MW: 34767.4 Da    PI: 9.8365
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059136genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.61.6e-2341132284
              trihelix   2 WtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                           Wtkqe+l Li++++ +e+r+ r+          + +++W++vs++++++g++r+p+qC+++w+nl++ +kkike+e++ ++e++s + +
  PGSC0003DMP400059136  41 WTKQEILILIQGKKVIEDRFHRALtggmelgsiQVEAKWDSVSSYCKRQGVNRGPIQCQKRWSNLAGVFKKIKEWESQIKEEKESFWMM 129
                           *********************97555667777899********************************************9999998888 PP

              trihelix  82 fdq 84 
                            ++
  PGSC0003DMP400059136 130 RND 132
                           776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.43540106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-440105IPR009057Homeodomain-like
PfamPF138371.1E-1040129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MASKSNNLKQ LILIPSTDSD GRQQSINGVN DANKVSRLPP WTKQEILILI QGKKVIEDRF  60
HRALTGGMEL GSIQVEAKWD SVSSYCKRQG VNRGPIQCQK RWSNLAGVFK KIKEWESQIK  120
EEKESFWMMR NDFKREKKLP GFFDRQVFDI LDHGNGNEEG LDLASTSEVL FNSGRSVVVG  180
DDGLFSDVPQ MNEDAIPMLT LKEPDQPLSQ VSPTQAGVRQ TTTPGADKGR GQEGRKRKRN  240
DSNDEKIRNV QHHLVKVLER NGKMVSSQLE AQNMHSEKDR EQRKDHVDNL VVVLNKLAGA  300
LGRIADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059136
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2466360.0AC246636.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167214.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLM1DDW20.0M1DDW2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000874610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-84Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]