PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400058999 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 49637.4 Da PI: 6.1109 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 153 | 199 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+++ gR +kqc++rw+++l PGSC0003DMP400058999 153 KGQWTIEEDRLLIHLVEKFGIRKWSQIAQMLK-GRIGKQCRERWHNHL 199 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 206 | 247 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+ PGSC0003DMP400058999 206 DFWTEEEDRILIQAHGEVGNK-WAEIAKRLP-GRTENSIKNHWN 247 67*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.625 | 148 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-15 | 152 | 201 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.16E-32 | 153 | 246 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-15 | 153 | 199 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 154 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.20E-14 | 156 | 199 | No hit | No description |
SMART | SM00717 | 2.6E-17 | 204 | 252 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.239 | 204 | 254 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 208 | 253 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.88E-13 | 208 | 250 | No hit | No description |
Pfam | PF00249 | 1.0E-15 | 208 | 247 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MELDPFFMSN NMLKQENDDF CLDSKDYLQD FEHLDHNFSN TFNNFSENFV IDGNTNGTYH 60 DPFDPFSNIE DNFSLLGDFN FSNYELNPFD QENGESSGIK VMKNNFHVVD GVNVPDDQSS 120 CVTGDIYHNN LSSSMKKKLG GGSGRPKKSK SSKGQWTIEE DRLLIHLVEK FGIRKWSQIA 180 QMLKGRIGKQ CRERWHNHLR PDIKKDFWTE EEDRILIQAH GEVGNKWAEI AKRLPGRTEN 240 SIKNHWNATK RRQFSRRKCR TKWPRPSSLL QNYIKSLNLE KGSTKKSNDT NPNGRVDLSC 300 VELSNYPGGL TYTGSIPEKK NENLVNRPNK RHAKVSPKPE AIEFCQGNNN NNNNIGDFDL 360 SEVPEFTLDD NFFMEEINIP HVGSSSIMVN ENNYEKCMGM EIMPYYEVPT MMQGEVNKEI 420 DLMEMISRVN * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-46 | 153 | 253 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-46 | 153 | 253 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400058999 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242162.1 | 0.0 | transcription factor MYB98-like | ||||
TrEMBL | M1DDL7 | 0.0 | M1DDL7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400087324 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-71 | myb domain protein 98 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400058999 |
Publications ? help Back to Top | |||
---|---|---|---|
|