PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058999
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 431aa    MW: 49637.4 Da    PI: 6.1109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058999genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-16153199148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT eEd ll+++v+++G + W+ Ia+++  gR +kqc++rw+++l
  PGSC0003DMP400058999 153 KGQWTIEEDRLLIHLVEKFGIRKWSQIAQMLK-GRIGKQCRERWHNHL 199
                           799****************************9.*************97 PP

2Myb_DNA-binding54.72.3e-17206247245
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           + WT+eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+
  PGSC0003DMP400058999 206 DFWTEEEDRILIQAHGEVGNK-WAEIAKRLP-GRTENSIKNHWN 247
                           67*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.625148203IPR017930Myb domain
SMARTSM007177.6E-15152201IPR001005SANT/Myb domain
SuperFamilySSF466899.16E-32153246IPR009057Homeodomain-like
PfamPF002491.3E-15153199IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-27154207IPR009057Homeodomain-like
CDDcd001677.20E-14156199No hitNo description
SMARTSM007172.6E-17204252IPR001005SANT/Myb domain
PROSITE profilePS5129422.239204254IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-22208253IPR009057Homeodomain-like
CDDcd001672.88E-13208250No hitNo description
PfamPF002491.0E-15208247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MELDPFFMSN NMLKQENDDF CLDSKDYLQD FEHLDHNFSN TFNNFSENFV IDGNTNGTYH  60
DPFDPFSNIE DNFSLLGDFN FSNYELNPFD QENGESSGIK VMKNNFHVVD GVNVPDDQSS  120
CVTGDIYHNN LSSSMKKKLG GGSGRPKKSK SSKGQWTIEE DRLLIHLVEK FGIRKWSQIA  180
QMLKGRIGKQ CRERWHNHLR PDIKKDFWTE EEDRILIQAH GEVGNKWAEI AKRLPGRTEN  240
SIKNHWNATK RRQFSRRKCR TKWPRPSSLL QNYIKSLNLE KGSTKKSNDT NPNGRVDLSC  300
VELSNYPGGL TYTGSIPEKK NENLVNRPNK RHAKVSPKPE AIEFCQGNNN NNNNIGDFDL  360
SEVPEFTLDD NFFMEEINIP HVGSSSIMVN ENNYEKCMGM EIMPYYEVPT MMQGEVNKEI  420
DLMEMISRVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-461532534104C-Myb DNA-Binding Domain
1msf_C7e-461532534104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058999
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242162.10.0transcription factor MYB98-like
TrEMBLM1DDL70.0M1DDL7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000873240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-71myb domain protein 98
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]