PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400058804 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20878 Da PI: 9.5009 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.2 | 3.5e-12 | 23 | 68 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y+GVr ++ + ++ Ae ++++ + ++lg+f+t eeAa+a+++a + ++ PGSC0003DMP400058804 23 YSGVRKRS-QAKYKAE---FTNQ--NVCVWLGNFDTQEEAARAYDKATRMYH 68 99***888.9******...9774..4********************987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-12 | 22 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.422 | 22 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.56E-13 | 23 | 79 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-14 | 23 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-7 | 23 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-5 | 23 | 34 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-18 | 23 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-5 | 43 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.26E-12 | 102 | 157 | No hit | No description |
SMART | SM00380 | 2.6E-5 | 102 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.117 | 102 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-13 | 102 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-9 | 103 | 158 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MTERGNCIVV VVTTTVTPNE VPYSGVRKRS QAKYKAEFTN QNVCVWLGNF DTQEEAARAY 60 DKATRMYHDA KSKLNFPMSN EDNLENGIVA IVTIVVIPIE IRYRSVRKMP WGKYKTNTTN 120 QKLCVWLGTF DRKEEPAKTY LKAMWMYRGL KAKINFPTLN EDNLENEELN LELTLALSGR 180 K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400058804 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015163300.1 | 2e-97 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
TrEMBL | M1DD79 | 1e-132 | M1DD79_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400087129 | 1e-133 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-15 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400058804 |
Publications ? help Back to Top | |||
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