PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400058755 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 162aa MW: 18782.6 Da PI: 9.9195 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.7 | 3e-29 | 16 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr..atksgyWkat 86 lp Gf+F Ptdeel yLk k ++ + +++++diy++eP++L v+++ + ++yfF+ ++kk +g++ +r +gyWk+t PGSC0003DMP400058755 16 LPIGFHFVPTDEELN-MYLKLKGSNGYILP-GIFTDLDIYQYEPHELSGFVEEHWNgRMYFFTLAKKKFGNGNKLERnlHSGKGYWKST 102 699**********97.99*99999988666.78**************966655544477***************9994345699***** PP NAM 87 gkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 k++++ +++ +g+k+ L++ k +++kg+kt+W+m eyr+ PGSC0003DMP400058755 103 QARKDIVK-NNNIIGTKTPLAYIKSspNNSKGKKTSWLMSEYRF 145 *******9.999***********764478899**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-31 | 13 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.353 | 16 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-15 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MALSNYEYDR QWKNILPIGF HFVPTDEELN MYLKLKGSNG YILPGIFTDL DIYQYEPHEL 60 SGFVEEHWNG RMYFFTLAKK KFGNGNKLER NLHSGKGYWK STQARKDIVK NNNIIGTKTP 120 LAYIKSSPNN SKGKKTSWLM SEYRFPSNSP LLIKEVCKLF I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-18 | 7 | 145 | 6 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400058755 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-77 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165309.1 | 3e-98 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | M1DD44 | 1e-115 | M1DD44_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400087080 | 1e-116 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15567 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-21 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400058755 |
Publications ? help Back to Top | |||
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