PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058665
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 129aa    MW: 14835 Da    PI: 10.6009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058665genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.91.2e-08105125223
                   AP2   2 gykGVrwdkkrgrWvAeIrdps 23 
                           +y GVr++k +grWvAeIrd++
  PGSC0003DMP400058665 105 KYMGVRQRK-WGRWVAEIRDVR 125
                           89******9.**********64 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-8105125IPR001471AP2/ERF domain
PROSITE profilePS510329.769105128IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-5105125IPR016177DNA-binding domain
PfamPF008471.9E-4105125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MASKDEIHEN EVVKKPSKTV RGKKSNLMGE HSVVLPRIVR IYITDNDATD SSSDEEENLQ  60
GEKSKRHKRI CKEIINRNGK TKVTSKMVSS KEKIDTKLLQ ENVNKYMGVR QRKWGRWVAE  120
IRDVRANK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-128HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769795.12e-69LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF069-like
TrEMBLM1DCY27e-87M1DCY2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000869901e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-14cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]