PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400058597 | ||||||||
Common Name | LOC102591238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 390aa MW: 43407.1 Da PI: 4.4196 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g PGSC0003DMP400058597 131 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 180 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-30 | 130 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 131 | 188 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-12 | 131 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.59E-33 | 131 | 187 | No hit | No description |
SMART | SM00380 | 1.1E-39 | 131 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.947 | 131 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDHHLLCPIK YTEHRNVIRK VTKPSLVKSK KFPEATKSSQ FNPSVPRTVR ISVTDPDATD 60 SSSDEEDMLF GRRRVKKYIN EISIETAVKC EVSIPNSGNG KTVNKRAPEP LQTKQKPMKV 120 QPPQSAGAVR KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG 180 PDALTNFSTP PKPEPEPEPE PEISVLSHSG YESGNESRNI PSPTSVLRFR MSQSESGSDP 240 IHVSEECPSI QGSMECEQTV QPFVQCAAEP QLVQQDVEEC QGETSMIPDY SNDYLPTDIP 300 FLNDFFNFDG SAAEQTLFED STITSTTTTT PNCPNDFGSL YNDSLDFGND FLFNDADFAE 360 FSNFDDLGMD DFSQDSVVDY SSVDSLLAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 130 | 187 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400058597 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350598.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | M1DCS9 | 0.0 | M1DCS9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400086922 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-63 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400058597 |
Entrez Gene | 102591238 |
Publications ? help Back to Top | |||
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