PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058597
Common NameLOC102591238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 390aa    MW: 43407.1 Da    PI: 4.4196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058597genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19131180255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  PGSC0003DMP400058597 131 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 180
                           89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-30130188IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21131188IPR016177DNA-binding domain
PfamPF008471.1E-12131180IPR001471AP2/ERF domain
CDDcd000184.59E-33131187No hitNo description
SMARTSM003801.1E-39131194IPR001471AP2/ERF domain
PROSITE profilePS5103223.947131188IPR001471AP2/ERF domain
PRINTSPR003674.6E-10132143IPR001471AP2/ERF domain
PRINTSPR003674.6E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDHHLLCPIK YTEHRNVIRK VTKPSLVKSK KFPEATKSSQ FNPSVPRTVR ISVTDPDATD  60
SSSDEEDMLF GRRRVKKYIN EISIETAVKC EVSIPNSGNG KTVNKRAPEP LQTKQKPMKV  120
QPPQSAGAVR KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG  180
PDALTNFSTP PKPEPEPEPE PEISVLSHSG YESGNESRNI PSPTSVLRFR MSQSESGSDP  240
IHVSEECPSI QGSMECEQTV QPFVQCAAEP QLVQQDVEEC QGETSMIPDY SNDYLPTDIP  300
FLNDFFNFDG SAAEQTLFED STITSTTTTT PNCPNDFGSL YNDSLDFGND FLFNDADFAE  360
FSNFDDLGMD DFSQDSVVDY SSVDSLLAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21130187159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350598.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLM1DCS90.0M1DCS9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000869220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-63cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]