PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058538
Common NameLOC102596674
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 394aa    MW: 44510.1 Da    PI: 6.4687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058538genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10197242454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h + E++RR +  ++f+ Lr+l+P++      K++ a+i   A+ YI++L
  PGSC0003DMP400058538 197 KHHASEKQRRVHFSDKFQALRTLIPNP-----SKNDRATIIADAIGYIHEL 242
                           799***********************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.23193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-8194243No hitNo description
SuperFamilySSF474593.93E-13196262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-8197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-13197261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-7199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MYASQSLSFH PTSDHQQDEK SFLQNHIATS GLVELQQQQL HSSENMNLNM QLEFGHDPNN  60
TRFHQNWEEI SFNPYNNQQL SYPISNPSNF LSTTTPSSSL GLLATSTNLF YEPPQLNMPL  120
NLCTPQSSLF KELFHLSPHG SSYGLGSSGT GSLFSHGHDQ EEVTGNLYHD GSFHELSGDM  180
MINSAAIKKR ELGKEIKHHA SEKQRRVHFS DKFQALRTLI PNPSKNDRAT IIADAIGYIH  240
ELKMRVNELM IQVDLKKERI KRQRSMVEED DAVIMEANQD DQQVMMNKST NWHHQIKSSK  300
NTSTEIDVRI MEDEVIVKLV QQKQILKGVN CLLLVSKTLD ELQLDLKHVA GGLIGDHYSY  360
LLNSKICEGC TVYASVVANK VIEVLDKKHA EIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354670.10.0PREDICTED: transcription factor bHLH89-like
TrEMBLM1DCN20.0M1DCN2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000868630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.26e-50bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]