PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058489
Common NameLOC107059998
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 171aa    MW: 19179.8 Da    PI: 8.7868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058489genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.7e-101860450
                   AP2  4 kGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50
                           GVr +k +g++ AeIr+p        k+++lg+f t +eA +++   +
  PGSC0003DMP400058489 18 VGVRKRK-SGKFGAEIRHP-----IekKNIWLGTFTTVDEASARYKSKK 60
                          6***999.7*********8.....335***************9997655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-41570IPR001471AP2/ERF domain
PROSITE profilePS5103212.6811673IPR001471AP2/ERF domain
CDDcd000187.03E-131856No hitNo description
SuperFamilySSF541714.12E-101863IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-121962IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKSQKITSNK NCARLYPVGV RKRKSGKFGA EIRHPIEKKN IWLGTFTTVD EASARYKSKK  60
VEFEELMIAK NAKKDQISEK SDRKTCSDDG SKQKSSMCVT GNSNPSKGVE EKIKEEFGNE  120
MDEELFEGTW VKISEDNEVK ISHKLGVPVV DNYGYLVGEF SAMDNLSIDK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058489
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162709.11e-122PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLM1DCJ51e-121M1DCJ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000868141e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50751534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.29e-16ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]