PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400058270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 141aa MW: 17026.7 Da PI: 9.1329 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 45.1 | 3.2e-14 | 15 | 140 | 5 | 127 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 + F P++ +++++ L ++++ le ++ ++ vd+y e w++ + ++++ yf ++ +k++++ kr +r++ +g+Wk + k+v PGSC0003DMP400058270 15 YYFYPKERDVIKYLLVFMIDESLLEQHQYMQLVDLYADkESWEILEG--TNTNAGYFITPLKKEKPHHKRFKRIVGEGTWKIQDPAKKV 101 68*********888888888888999888*****9976489**9633..345677********************************** PP NAM 93 lskkgelvglkktLvfy....kgrapkgektdWvmheyr 127 +++kg+l+g + + + k++ k +W+m ey+ PGSC0003DMP400058270 102 FDEKGRLMGYVHHMKYTpctnKKSIIKELFDEWLMTEYS 140 ****************9654333333444689******5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.878 | 11 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-12 | 15 | 139 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-7 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MIVRDHHQPK RYSNYYFYPK ERDVIKYLLV FMIDESLLEQ HQYMQLVDLY ADKESWEILE 60 GTNTNAGYFI TPLKKEKPHH KRFKRIVGEG TWKIQDPAKK VFDEKGRLMG YVHHMKYTPC 120 TNKKSIIKEL FDEWLMTEYS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400058270 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019068304.1 | 2e-74 | uncharacterized protein LOC101262060 | ||||
TrEMBL | M1DC36 | 1e-100 | M1DC36_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400086595 | 1e-101 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400058270 |
Publications ? help Back to Top | |||
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