PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057983
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 362aa    MW: 40769.5 Da    PI: 4.6643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057983genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.62.2e-14711711128
                   NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlsk 95 
                           de+l+   L k v+g+++++    + vd+y   +P++L  ++++++ +e++ F++ +kk+ +gk+ nr  +   g Wk   ++++v++k
  PGSC0003DMP400057983   7 DEQLM-ICLLKFVSGSSVQF----QLVDLYGNnKPSQLFdTTTTTTATEYHVFTQLKKKKGNGKNFNRgiVGGGGSWKGVDNSRPVYDK 90 
                           66666.44556777777655....6788886548****74566667789*******************74445899************* PP

                   NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++++g kkt+ f   ++    +  W+m+eyrl
  PGSC0003DMP400057983  91 KKSVIGFKKTFRFE--EK----NHVWIMKEYRL 117
                           *************7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.3291145IPR003441NAC domain
SuperFamilySSF1019411.01E-167145IPR003441NAC domain
PfamPF023651.7E-68117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGMDFDDEQL MICLLKFVSG SSVQFQLVDL YGNNKPSQLF DTTTTTTATE YHVFTQLKKK  60
KGNGKNFNRG IVGGGGSWKG VDNSRPVYDK KKSVIGFKKT FRFEEKNHVW IMKEYRLCDK  120
ILKALTLRGH TRHEEEFVVC RITRSSVNSS KVIIPSDHNV ENFLDSLLIS SLQCQESFAQ  180
NQFQDLGQSF AQNQFQDLGQ SFAQNQFQDL GQSFAQNQFQ DLGQSFAQNQ FQDLGQSFAQ  240
YQFQDLGQLS TPNVIPSDES SSILNGNQIG PVSLVLKESK LSAVIEEECS VPVVHQQTPS  300
VKEVECSVYD IATYHKQLDA YAASVLESIV PYIPEPPQDD EADSIPPFYE DFYIGFTDLW  360
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057983
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-162PREDICTED: uncharacterized protein LOC107057785
TrEMBLM1DBG50.0M1DBG5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000863080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]