PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400057567 | ||||||||
Common Name | LOC102593384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20775.5 Da PI: 4.558 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.7 | 5.4e-12 | 22 | 51 | 13 | 42 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42 + R++ + KKA+ELS+LCd++v++i f + PGSC0003DMP400057567 22 LGERLASLCKKAYELSILCDVKVSIISFTP 51 567***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.76 | 2 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-13 | 14 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-9 | 14 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MTGKGVCWTT RNLDEGKRKK ILGERLASLC KKAYELSILC DVKVSIISFT PGETDNFTWP 60 SLTEANEIVT NYLACPEKQR QYKLVEHEAY LQSIVNDREK EIMELEKMAE EKEMENLFNQ 120 LVEGRKRFDE FDVCDIKGLL NLFNDKRAKL DQMEMQLSGN VANEIGANDN YAGEENDGHP 180 N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400057567 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356445.1 | 1e-133 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M1DAI1 | 1e-131 | M1DAI1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085892 | 1e-132 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 1e-14 | AGAMOUS-like 96 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400057567 |
Entrez Gene | 102593384 |
Publications ? help Back to Top | |||
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