PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057536
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 528aa    MW: 59790.9 Da    PI: 6.3091
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057536genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.51.7e-14199249455
               G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           ++Wt +L e+F ea e+L G  +  Pk+ile+m+v+gLt+ +v+  LQ+ R+
  PGSC0003DMP400057536 199 IEWTVDLREKFKEATERL-GDGRCLPKKILEIMNVPGLTRMQVANYLQRCRI 249
                           68****************.9****************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011010.7121103IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.1E-512110No hitNo description
SuperFamilySSF521726.06E-512114IPR011006CheY-like superfamily
SuperFamilySSF466891.55E-11194253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-15197252IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-12199250IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MFIIDFQNAW IYPVTTVDRI PVAMSILSQG KEKVDVVIVN VHSPDSLSFK LLKQADALDI  60
VTLFVCDEHD ELFAKKAFDN GTYLYMEKSL DENIMKYLWQ FVLRKKIQRD KVREGLDPKG  120
DHMKYVYNIG NENIVGNKGH VGEKIRSINN EEQTISIHET ERGTYKLRSK RCRKGKKVID  180
NGERQSTCID KTLKRNDYIE WTVDLREKFK EATERLGDGR CLPKKILEIM NVPGLTRMQV  240
ANYLQRCRIN QRRPLEEQTY IQQGSSSGSQ QRIETNSHKI FGRIHDLQTN VPNQIHGDPE  300
FSPVNTNNIY ASSTEQQLCH PQLHVQQHHL SPFLSGQNND GGRLQQQHDL LLGSQGPIIE  360
STNNNFYMAS NSGDNHDYNL NREAQNDYSS GLNQVYVTTN STSAMMTDMN GGNAIINGSG  420
VANTNFQQYI GEQNKFVPSN VVATSNTSAN DISDLNEWEN CDAYLNFHNM DDLYQDIGAS  480
SSILPNEHGS EYDQVYSFDQ VLGGAPVVRQ KVLVGAPVMR QKPVSEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057536
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168360.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLM1DAF50.0M1DAF5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000858610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-25response regulator 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]