PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400057446 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14681.6 Da PI: 7.4346 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 31 | 107 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 ++p kfa++ ++ +++++ led+ gr+W ++ +++ g+ +++GW +F ++++k+g+f+vF+++ + + f v++fr PGSC0003DMP400057446 31 CFPPKFARSVSHL--TDREIYLEDSCGRRWMATV--CNYNGSLAIQQGWAKFSAEHDVKVGEFFVFHYVPNdQHF--IVQIFR 107 5799***999755..5669***************..********************************9643555..**9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 6.6E-4 | 21 | 109 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.53E-18 | 27 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.0E-14 | 31 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-16 | 31 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.13E-15 | 32 | 107 | No hit | No description |
PROSITE profile | PS50863 | 11.758 | 32 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MNEVDLCWNG SSKIQELERF CNRSISHPPH CFPPKFARSV SHLTDREIYL EDSCGRRWMA 60 TVCNYNGSLA IQQGWAKFSA EHDVKVGEFF VFHYVPNDQH FIVQIFRISG CEKINFDSYI 120 CKGKQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400057446 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 7e-85 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159850.1 | 4e-54 | PREDICTED: B3 domain-containing protein Os02g0598200-like | ||||
TrEMBL | M1DA84 | 1e-90 | M1DA84_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085771 | 2e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24650.1 | 9e-08 | DNA binding;DNA binding;sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400057446 |
Publications ? help Back to Top | |||
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