PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400057238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 141aa MW: 15810.2 Da PI: 10.7355 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 62 | 1.5e-19 | 2 | 67 | 29 | 97 |
DUF573 29 spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +ps+ + af+ef++++++++vsksq+++K++rLKkK+ ++vk+ g+e++f+k +d ife+sk+iWg PGSC0003DMP400057238 2 KPSAKMFAFHEFIREKLQVEVSKSQISDKVKRLKKKYLTNVKD---GEETVFTKGQDFLIFEHSKRIWG 67 5778899**********************************99...**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.2E-15 | 3 | 67 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MKPSAKMFAF HEFIREKLQV EVSKSQISDK VKRLKKKYLT NVKDGEETVF TKGQDFLIFE 60 HSKRIWGAPG TSNGGVKENV NNNTNGKATK TVKVKKSSEP KENGEEPETT PPIEKRPITK 120 KSVQTHRNLN LLLISKAKMG * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400057238 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305529.1 | 8e-54 | STOREKEEPER protein | ||||
Swissprot | Q94IK2 | 7e-55 | STK_SOLTU; STOREKEEPER protein | ||||
TrEMBL | M1D9S1 | 3e-96 | M1D9S1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085563 | 5e-97 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2369 | 20 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 2e-12 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400057238 |
Publications ? help Back to Top | |||
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