PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056843
Common NameLOC107062344
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 291aa    MW: 32240 Da    PI: 5.7186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056843genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-174695255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  PGSC0003DMP400056843 46 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 95
                          59****999.**********954...5999*******************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.32646103IPR001471AP2/ERF domain
PfamPF008471.9E-114691IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2146103IPR016177DNA-binding domain
SMARTSM003801.7E-3646109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2946103IPR001471AP2/ERF domain
CDDcd000181.38E-2046103No hitNo description
PRINTSPR003672.6E-104758IPR001471AP2/ERF domain
PRINTSPR003672.6E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MNSTSAGSDN PHPTQDINHQ EKSTSEEKSN KKGSKGKGGP DNNKFRYRGV RQRSWGKWVA  60
EIREPRKRTR RWLGTFATAE DAARAYDRAA IILYGSKAQL NLQPSGANAS SSSSNSSKRG  120
STSSTTQTLR PLLPRPPSGF DLSFSSSSST LLPPNVLAPA NNYLPYGFYP AVQYAEDISQ  180
NPQYSIQKQT FDDNYGYLDG ETTKASGMIW SDSNSNPNPN PNPREEDQNQ QYNQHNCLYD  240
NVNTFVDAAP VVSDPVASPV LWPPIIDDND NYHPADIWDY GNNDPFLFDF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1747102359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056843
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-151HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168367.10.0PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLM1D8W60.0M1D8W6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000851680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.15e-25ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]